Our Publications

Transcriptional and post-transcriptional regulations in agricultural species after stresses
S Tan, R Alex, T Unver

Frontiers in Genetics 13, 1127832

Colorimetric and fluorometric reverse transcription loop-mediated isothermal amplification (RT-LAMP) assay for diagnosis of SARS-CoV-2

G Alhamid, H Tombuloglu, D Motabagani, D Motabagani, AA Rabaan, ...

Functional & Integrative Genomics 22 (6), 1391-1401

A Review on Allium Biodiversity

A Bermúdez, J Martín, T Unver, P Hernández, G Dorado

Edible Alliums: Botany, Production and Uses, 20

Evolutionary divergence of duplicated genomes in newly described allotetraploid cottons

R Peng, Y Xu, S Tian, T Unver, Z Liu, Z Zhou, X Cai, K Wang, Y Wei, Y Liu, ...

Proceedings of the national academy of sciences 119 (39), e2208496119

Roles and regulatory mechanisms of microRNA in plant development, evolution, and adaptation

X Yang, T Unver, X Zhang, L Li

Frontiers in Plant Science 13, 995517

Data_Sheet_1_Capturing Wheat Phenotypes at the Genome Level. docx

B Hussain, BA Akpınar, M Alaux, AM Algharib, D Sehgal, Z Ali, GI Aradottir, ...

Figshare

Capturing wheat phenotypes at the genome level

B Hussain, BA Akpınar, M Alaux, AM Algharib, D Sehgal, Z Ali, GI Aradottir, ...

Frontiers in Plant Science 13, 851079

Global gene expression profiling in congenital diaphragmatic hernia (CDH) patients

K Gurunluoglu, M Dundar, T Unver, N Akpinar, IK Gokce, S Gurunluoglu, ...

FUNCTIONAL & INTEGRATIVE GENOMICS 22 (3), 359-369

Genome-wide exploration of oil biosynthesis genes in cultivated olive tree varieties (Olea europaea): insights into regulation of oil biosynthesis

R Vatansever, P Hernandez, FJ Escalante, G Dorado, T Unver

Functional & Integrative Genomics 22 (2), 171-178

Aegilops tauschii genome assembly Aet v5.0 features greater sequence contiguity and improved annotation

L Wang, T Zhu, JC Rodriguez, KR Deal, J Dubcovsky, PE McGuire, T Lux, ...

G3 11 (12), jkab325

Oil Crop Genomics

H Tombuloglu, T Unver, G Tombuloglu, KR Hakeem

Springer International Publishing

Genome wide MeDIP-Seq profiling of wild and cultivated olives trees suggests DNA methylation fingerprint on the sensory quality of olive oil

O Badad, N Lakhssassi, N Zaid, A El Baze, Y Zaid, J Meksem, ...

Plants 10 (7), 1405

Comparative transcriptome analysis of resistant and cultivated tomato lines in response to Clavibacter michiganensis subsp. michiganensis

H Basim, E Basim, H Tombuloglu, T Unver

Genomics 113 (4), 2455-2467

Wheat genomics and breeding: bridging the gap.

B Hussain, BA Akpınar, M Alaux, AM Algharib, D Sehgal, Z Ali, R Appels, ...

AgriRxiv, 20210081805

CRISPR/Cas: A powerful tool for gene function study and crop improvement

D Zhang, Z Zhang, T Unver, B Zhang

Journal of Advanced Research 29, 207-221

Olive-tree genome sequencing: towards a better understanding of oil biosynthesis

M Aydin, H Tombuloglu, P Hernandez, G Dorado, T Unver

Oil Crop Genomics, 75-87

Applications of CRISPR/Cas9 in Oil Crops to Improve Oil Composition

S Smajlovic, A Frkatovic, H Sabit, H Tombuloglu, T Unver

Oil Crop Genomics, 383-391

Integrated Omics Analysis of Benzylisoquinoline Alkaloid (BIA) Metabolism in Opium Poppy (Papaver somniferum L.)

K Yucebilgili Kurtoglu, T Unver

Oil Crop Genomics, 291-315

CRISPR Applications in Crops

N Alqahantani, B Alotaibi, R Alshumrani, M Bamhrez, T Unver, ...

Oil Crop Genomics, 367-381

Barley long non-coding RNAs (lncRNA) responsive to excess boron

T Unver, H Tombuloglu

Genomics 112 (2), 1947-1955

MicroRNA‐based biotechnology for Medicago improvement

B Zhang, T Unver

The Model Legume Medicago truncatula, 987-990

Two novel methylesterases from Olea europaea contribute to the catabolism of oleoside-type secoiridoid esters (vol 250, pg 2083, 2019)

J Volk, A Sarafeddinov, T Unver, S Marx, J Tretzel, J Zotzel, H Warzecha

PLANTA 250 (6), 2099-2099

Two novel methylesterases from Olea europaea contribute to the catabolism of oleoside-type secoiridoid esters

J Volk, A Sarafeddinov, T Unver, S Marx, J Tretzel, J Zotzel, H Warzecha

Planta 250, 2083-2097

Polymerase chain reaction (PCR)

G Dorado, G Besnard, T Unver, P Hernández Molina

Elsevier

Nucleic-acid sequencing

G Dorado, S Gálvez, H Budak, T Unver, P Hernández Molina

Elsevier

A critical and speculative review on microRNA technology in crop improvement: Current challenges and future directions

B Zhang, T Unver

Plant Science 274, 193-200

CRISPR/Cas9: an RNA‐guided highly precise synthetic tool for plant genome editing

Y Demirci, B Zhang, T Unver

Journal of Cellular Physiology 233 (3), 1844-1859

First draft genome assembly of the Argane tree (Argania spinosa)

S Khayi, NE Azza, F Gaboun, S Pirro, O Badad, MG Claros, DA Lightfoot, ...

F1000Research 7

Barley Long Non-Coding RNAs and Their Tissue-Specific Co-expression Pattern with Coding-Transcripts

G Karakülah, T Unver

BioRxiv, 229559

Genome of wild olive and the evolution of oil biosynthesis

T Unver, Z Wu, L Sterck, M Turktas, R Lohaus, Z Li, M Yang, L He, T Deng, ...

Proceedings of the National Academy of Sciences 114 (44), E9413-E9422

Discovery Of Drought-Responsive Transposable Element-Related Peach miRNAs

AK Pekmezci, G Karakülah, T Unver

bioRxiv, doi: https://doi.org/10.1101/143115

MicroRNA exocytosis by large dense-core vesicle fusion

A Gümürdü, R Yildiz, E Eren, G Karakülah, T Ünver, Ş Genç, Y Park

Scientific reports 7 (1), 45661

A high-efficiency CRISPR/Cas9 system for targeted mutagenesis in Cotton (Gossypium hirsutum L.)

C Li, T Unver, B Zhang

Scientific reports 7 (1), 43902

Molecular markers

G Dorado, T Unver, H Budak, P Hernández Molina

Elsevier

Differential Expression of Hyperhydricity Responsive Peach miRNAs

E Diler, T Unver, G Karakülah

Journal of Integrative Bioinformatics 15 (3), 308

PeTMbase: A Database of Plant Endogenous Target Mimics (eTMs)

G Karakulah, K Kurtoglu Yucebilgili, T Unver

Plos One 11 (12), e0167698

Differentiation of bread wheat transcription factors against major abiotic stresses

G Akdogan, M Turktas, E Tufekci, T Unver

Manipulating the Biosynthesis of Bioactive Compound Alkaloids for Next-Generation Metabolic Engineering in Opium Poppy Using CRISPR-Cas 9 Genome Editing Technology

Y Alagoz, T Gurkok, B Zhang, T Unver

Nature (Scientific Reports) 2016 (6), 30910

Global transcriptome analysis reveals differences in gene expression patterns between nonhyperhydric and hyperhydric peach leaves

Y Bakir, V Eldem, G Zararsiz, T Unver

The plant genome 9 (2), plantgenome2015.09.0080

miRNA-based drought regulation in wheat

G Akdogan, ED Tufekci, S Uranbey, T Unver

Functional & integrative genomics 16, 221-233

Drought-Responsive Hsp70 Gene Analysis in Populus at Genome-Wide Level

EN Yer, MC Baloglu, UT Ziplar, S Ayan, T Unver

Plant molecular biology reporter 34, 483-500

Aquaporins in boron-tolerant barley: identification, characterization, and expression analysis

H Tombuloglu, I Ozcan, G Tombuloglu, S Sakcali, T Unver

Plant Molecular Biology Reporter 34, 374-386

Functional Characterization of 4′OMT and 7OMT Genes in BIA Biosynthesis

T Gurkok, E Ozhuner, I Parmaksiz, S Özcan, M Turktas, A Ipek, I Demirtas, ...

Frontiers in plant science 7, 98

Genome-wide characterization and expression analysis of common bean bHLH transcription factors in response to excess salt concentration

M Kavas, MC Baloğlu, ES Atabay, UT Ziplar, HY Daşgan, T Ünver

Molecular genetics and genomics 291, 129-143

Identification and sequence analysis of alkaloid biosynthesisgenes in Papaver section Oxytona

Y ALAGÖZ, T GÜRKÖK, I Parmaksiz, T Ünver

Turkish Journal of Biology 40 (1), 174-183

De novo whole genome sequencing of olive tree (Olea europaea L.)

T Unver, M Turktas, G Dorado, P Hernandez, Y Van de Peer

Abstract of the XXIV international plant & animal genome, San Diego, CA, USA …

Transcriptome analysis of wheat inoculated with Fusarium graminearum

M Erayman, M Turktas, G Akdogan, T Gurkok, B Inal, E Ishakoglu, E Ilhan, ...

Frontiers in Plant Science 6, 867

Antimicrobial Polypeptides in the Control of Plant Pathogenic Bacteria

V Eldem, Y Bakir, T Unver

Sustainable Approaches to Controlling Plant Pathogenic Bacteria, 123

Hexaploid wheat (Triticum aestivum) root miRNome analysis in response to salt stress

H Eren, MY Pekmezci, S Okay, M Turktas, B Inal, E Ilhan, M Atak, ...

Annals of Applied Biology 167 (2), 208-216

Transcriptome profiling of alkaloid biosynthesis in elicitor induced opium poppy

T Gurkok, M Turktas, I Parmaksiz, T Unver

Plant Molecular Biology Reporter 33, 673-688

Regulation of the alkaloid biosynthesis by mi RNA in opium poppy

H Boke, E Ozhuner, M Turktas, I Parmaksiz, S Ozcan, T Unver

Plant biotechnology journal 13 (3), 409-420

High-throughput transcriptome analysis of barley (Hordeum vulgare) exposed to excessive boron

G Tombuloglu, H Tombuloglu, MS Sakcali, T Unver

Gene 557 (1), 71-81

Isolation, molecular characterization and functional analysis of OeMT2, an olive metallothionein with a bioremediation potential

E Dundar, GD Sonmez, T Unver

Molecular genetics and genomics 290, 187-199

miR408 overexpression causes increased drought tolerance in chickpea

M Hajyzadeh, M Turktas, KM Khawar, T Unver

Gene 555 (2), 186-193

Genomics and transcriptomics for utilization of plant genetic resources and crop improvement.

T Ünver, G Dorado, B Zhang

Turkish Journal of Agriculture and Forestry 39 (3)

Sequencing of plant genomes–a review

M TÜRKTAŞ, KY KURTOĞLU, G DORADO, B ZHANG, P HERNANDEZ, ...

Turkish Journal of Agriculture and Forestry 39, 361-376

Genome-wide fungal stress responsive miRNA expression in wheat

B Inal, M Türktaş, H Eren, E Ilhan, S Okay, M Atak, M Erayman, T Unver

Planta 240, 1287-1298

Diverse expression pattern of wheat transcription factors against abiotic stresses in wheat species

MC Baloglu, B Inal, M Kavas, T Unver

Gene 550 (1), 117-122

Transcriptome-wide identification of bread wheat WRKY transcription factors in response to drought stress

S Okay, E Derelli, T Unver

Molecular Genetics and Genomics 289, 765-781

Classification of RNA-Seq data via bagging support vector machines

G Zararsiz, D Goksuluk, S Korkmaz, V Eldem, IP Duru, T Unver, A Ozturk

bioRxiv, 007526

Genome-wide analysis of the bZIP transcription factors in cucumber

MC Baloglu, V Eldem, M Hajyzadeh, T Unver

PloS one 9 (4), e96014

MLSeq package: Machine Learning Interface to RNA-Seq Data

G Zararsiz, D Goksuluk, S Korkmaz, V Eldem, IP Duru, T Unver, A Ozturk

Isolation and expression analysis of cDNAs that are associated with alternate bearing in Olea europaeaL. cv. Ayvalık

E Dündar, Ö Suakar, T Unver, A Dagdelen

BMC genomics 14 (1), 1-14

Genome-wide identification of alternate bearing-associated microRNAs (miRNAs) in olive (Olea europaeaL.)

H Yanik, M Turktas, E Dundar, P Hernandez, G Dorado, T Unver

BMC plant biology 13 (1), 1-22

Proteome changes in wild and modern wheat leaves upon drought stress by two-dimensional electrophoresis and nanoLC-ESI–MS/MS

H Budak, BA Akpinar, T Unver, M Turktas

Plant molecular biology 83, 89-103

DNA SSR fingerprinting analysis among cherry laurel (Prunus laurocerasus L.) types

M Hajyzadeh, A Cavusoglu, M Sulusoglu, T Unver

Journal of Food, Agriculture & Environment 11 (2), 630-638

Transcriptome-wide identification of R2R3-MYB transcription factors in barley with their boron responsive expression analysis

H Tombuloglu, G Kekec, MS Sakcali, T Unver

Molecular genetics and genomics 288, 141-155

In planta evidence for the involvement of a ubiquitin conjugating enzyme (UBC E2 clade) in negative regulation of disease resistance

T Unver, M Turktas, H Budak

Plant Molecular Biology Reporter 31, 323-334

Nutrition metabolism plays an important role in the alternate bearing of the olive tree (Olea europaea L.)

M Turktas, B Inal, S Okay, EG Erkilic, E Dundar, P Hernandez, G Dorado, ...

PloS one 8 (3), e59876

Boron stress responsive microRNAs and their targets in barley

E Ozhuner, V Eldem, A Ipek, S Okay, S Sakcali, B Zhang, H Boke, T Unver

PloS one 8 (3), e59543

Plant microRNAs: new players in functional genomics

V Eldem, S Okay, T Ünver

Turkish Journal of Agriculture and Forestry 37 (1), 1-21

Genome-Wide Identification of miRNAs Responsive to Drought in Peach (Prunus persica) by High-Throughput Deep Sequencing

V Eldem, U Çelikkol Akçay, E Ozhuner, Y Bakır, S Uranbey, T Unver

PloS one 7 (12), e50298

Micro-RNA Regulation for Boron Toxicity Tolerance in Barley

T Unver, EG Erkilic, V Eldem, S Sakcali, A Ipek, S Uranbey, S Ozcan

IN VITRO CELLULAR & DEVELOPMENTAL BIOLOGY-ANIMAL 48, 40-40

Characterization of Novel Opium Poppy Micro-RNAs: A New Insight for Alkaloid Biosynthesis

T Unver, A Ipek, I Parmaksiz, S Uranbey, S Ozcan

Springer

Regulation of barley miRNAs upon dehydration stress correlated with target gene expression

M Kantar, T Unver, H Budak

Functional & integrative genomics 10, 493-507

Identification of conserved micro-RNAs and their target transcripts in opium poppy (Papaver somniferum L.)

T Unver, İ Parmaksız, E Dündar

Plant cell reports 29, 757-769

Genome-wide profiling and analysis of Festuca arundinacea miRNAs and transcriptomes in response to foliar glyphosate application

T Unver, M Bakar, RC Shearman, H Budak

Molecular Genetics and Genomics 283, 397-413

Genome sequencing and analysis of the model grass Brachypodium distachyon

DNA sequencing and assembly Barry Kerrie 5 Lucas Susan 5 Harmon-Smith ...

Nature 463 (7282), 763-768

Conserved microRNAs and their targets in model grass species Brachypodium distachyon

T Unver, H Budak

Planta 230, 659-669

A new ZTL-type F-box functions as a positive regulator in disease resistance: VIGS analysis in barley against powdery mildew

YF Dagdas, G Dagdas, T Unver, MS Akkaya

Physiological and molecular plant pathology 74 (1), 41-44

Review of current methodological approaches for characterizing microRNAs in plants

T Unver, DM Namuth-Covert, H Budak

International journal of plant genomics 2009

Virus-induced gene silencing, a post transcriptional gene silencing method

T Unver, H Budak

International journal of plant genomics 2009

Identification of differentially expressed transcripts from leaves of the boron tolerant plant Gypsophila perfoliata L.

T Unver, O Bozkurt, MS Akkaya

Plant cell reports 27, 1411-1422

Genes associated with resistance to wheat yellow rust disease identified by differential display analysis

O Bozkurt, T Unver, MS Akkaya

Physiological and Molecular Plant Pathology 71 (4), 251-259

We are thrilled to share with you our extensive portfolio of published articles in renowned journals like
Nature, PLOS ONE, PNAS, Plant Biotechnology and Frontiers. These articles reflect our dedication to cutting-edge research and our passion for contributing to the forefront of scientific discovery.